Volume 11; Issue 4 Suppleme

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BMC Genomics
Volume 11; Issue 4 Suppleme

BMC Genomics

Volume 11; Issue 4 Suppleme

1

Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010)

Shoba Ranganathan, Christian Schönbach, Kenta Nakai, Tin Wee Tan

Journal:

Year:

2010

Language:

english

File:

PDF, 205 KB

english, 2010

2

Evolutionary patterns of amino acid substitutions in 12Drosophilagenomes

Lev Y Yampolsky, Michael A Bouzinier

Journal:

Year:

2010

Language:

english

File:

PDF, 1.42 MB

english, 2010

3

Refining orthologue groups at the transcript level

Yizhen Jia, Thomas KF Wong, You-Qiang Song, Siu-Ming Yiu, David K Smith

Journal:

Year:

2010

Language:

english

File:

PDF, 817 KB

english, 2010

4

RNA editing of nuclear transcripts inArabidopsis thaliana

Yijun Meng, Dijun Chen, YongFeng Jin, Chuanzao Mao, Ping Wu, Ming Chen

Journal:

Year:

2010

Language:

english

File:

PDF, 1.31 MB

english, 2010

5

PathLocdb: a comprehensive database for the subcellular localization of metabolic pathways and its application to multiple localization analysis

Min Zhao, Hong Qu

Journal:

Year:

2010

Language:

english

File:

PDF, 540 KB

english, 2010

6

Qualitative reasoning of dynamic gene regulatory interactions from gene expression data

Yu Chen, Byungkyu Park, Kyungsook Han

Journal:

Year:

2010

Language:

english

File:

PDF, 1.49 MB

english, 2010

7

Probing the anticancer mechanism of prospective herbal drug Withaferin A on mammals: a case study on human and bovine proteasomes

Abhinav Grover, Ashutosh Shandilya, Virendra S Bisaria, Durai Sundar

Journal:

Year:

2010

Language:

english

File:

PDF, 2.59 MB

english, 2010

8

Construction of a genetic AND gate under a new standard for assembly of genetic parts

Shotaro Ayukawa, Akio Kobayashi, Yusaku Nakashima, Hidemasa Takagi, Shogo Hamada, Masahiko Uchiyama, Katsuyuki Yugi, Satoshi Murata, Yasubumi Sakakibara, Masami Hagiya, Masayuki Yamamura, Daisuke Kiga

Journal:

Year:

2010

Language:

english

File:

PDF, 603 KB

english, 2010

9

Exploring hierarchical and overlapping modular structure in the yeast protein interaction network

Changning Liu, Jing Li, Yi Zhao

Journal:

Year:

2010

Language:

english

File:

PDF, 2.17 MB

english, 2010

10

Functional data analysis for identifying nonlinear models of gene regulatory networks

Georg Summer, Theodore J Perkins

Journal:

Year:

2010

Language:

english

File:

PDF, 1.34 MB

english, 2010

11

iCOD : an integrated clinical omics database based on the systems-pathology view of disease

Kazuro Shimokawa, Kaoru Mogushi, Satoshi Shoji, Atsuko Hiraishi, Keisuke Ido, Hiroshi Mizushima, Hiroshi Tanaka

Journal:

Year:

2010

Language:

english

File:

PDF, 1.58 MB

english, 2010

12

Predicting RNA-binding residues from evolutionary information and sequence conservation

Yu-Feng Huang, Li-Yuan Chiu, Chun-Chin Huang, Chien-Kang Huang

Journal:

Year:

2010

Language:

english

File:

PDF, 1.32 MB

english, 2010

13

Gerontome: a web-based database server for aging-related genes and analysis pipelines

Jekeun Kwon, Byungwook Lee, Haeyoung Chung

Journal:

Year:

2010

Language:

english

File:

PDF, 898 KB

english, 2010

14

SVM-based prediction of linear B-cell epitopes using Bayes Feature Extraction

JK Lawrence Wee, Diane Simarmata, Yiu-Wing Kam, FP Lisa Ng, Joo Chuan Tong

Journal:

Year:

2010

Language:

english

File:

PDF, 1.09 MB

english, 2010

15

Hierarchical kernel mixture models for the prediction of AIDS disease progression using HIV structural gp120 profiles

Paul D Yoo, Yung Shwen Ho, Jason Ng, Michael Charleston, Nitin K Saksena, Pengyi Yang, Albert Y Zomaya

Journal:

Year:

2010

Language:

english

File:

PDF, 841 KB

english, 2010

16

The interplay between evolution, regulation and tissue specificity in the Human Hereditary Diseasome

Shivashankar H Nagaraj, Aaron Ingham, Antonio Reverter

Journal:

Year:

2010

Language:

english

File:

PDF, 785 KB

english, 2010

17

Algorithms and semantic infrastructure for mutation impact extraction and grounding

Jonas B Laurila, Nona Naderi, René Witte, Alexandre Riazanov, Alexandre Kouznetsov, Christopher JO Baker

Journal:

Year:

2010

Language:

english

File:

PDF, 1.19 MB

english, 2010

18

Inhibition of the NEMO/IKKβ association complex formation, a novel mechanism associated with the NF-κB activation suppression byWithania somnifera’skey metabolite withaferin A

Abhinav Grover, Ashutosh Shandilya, Ankita Punetha, Virendra S Bisaria, Durai Sundar

Journal:

Year:

2010

Language:

english

File:

PDF, 4.16 MB

english, 2010

19

TSCC: Two-Stage Combinatorial Clustering for virtual screening using protein-ligand interactions and physicochemical features

Daniel L Clinciu, Yen-Fu Chen, Cheng-Neng Ko, Chi-Chun Lo, Jinn-Moon Yang

Journal:

Year:

2010

Language:

english

File:

PDF, 2.33 MB

english, 2010

20

Advancing standards for bioinformatics activities: persistence, reproducibility, disambiguation and Minimum Information About a Bioinformatics investigation (MIABi)

Tin Wee Tan, Joo Chuan Tong, Asif M Khan, Mark de Silva, Kuan Siong Lim, Shoba Ranganathan

Journal:

Year:

2010

Language:

english

File:

PDF, 552 KB

english, 2010

21

Sequence-dependent histone variant positioning signatures

Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho

Journal:

Year:

2010

Language:

english

File:

PDF, 564 KB

english, 2010

22

Improving protein secondary structure prediction based on short subsequences with local structure similarity

Hsin-Nan Lin, Ting-Yi Sung, Shinn-Ying Ho, Wen-Lian Hsu

Journal:

Year:

2010

Language:

english

File:

PDF, 771 KB

english, 2010

23

dbDEMC: a database of differentially expressed miRNAs in human cancers

Zhen Yang, Fei Ren, Changning Liu, Shunmin He, Gang Sun, Qian Gao, Lei Yao, Yangde Zhang, Ruoyu Miao, Ying Cao, Yi Zhao, Yang Zhong, Haitao Zhao

Journal:

Year:

2010

Language:

english

File:

PDF, 1.60 MB

english, 2010

24

UPS 2.0: unique probe selector for probe design and oligonucleotide microarrays at the pangenomic/genomic level

Shu-Hwa Chen, Chen-Zen Lo, Sheng-Yao Su, Bao-Han Kuo, Chao A Hsiung, Chung-Yen Lin

Journal:

Year:

2010

Language:

english

File:

PDF, 1.49 MB

english, 2010

25

NGSQC: cross-platform quality analysis pipeline for deep sequencing data

Manhong Dai, Robert C Thompson, Christopher Maher, Rafael Contreras-Galindo, Mark H Kaplan, David M Markovitz, Gil Omenn, Fan Meng

Journal:

Year:

2010

Language:

english

File:

PDF, 693 KB

english, 2010

26

Discovery and characterization of medaka miRNA genes by next generation sequencing platform

Sung-Chou Li, Wen-Ching Chan, Meng-Ru Ho, Kuo-Wang Tsai, Ling-Yueh Hu, Chun-Hung Lai, Chun-Nan Hsu, Pung-Pung Hwang, Wen-chang Lin

Journal:

Year:

2010

Language:

english

File:

PDF, 1.14 MB

english, 2010

27

In vitrohomology search array comprehensively reveals highly conserved genes and their functional characteristics in non-sequenced species

Atsushi Ogura, Masa-aki Yoshida, Mutsumi Fukuzaki, Jun Sese

Journal:

Year:

2010

Language:

english

File:

PDF, 1.46 MB

english, 2010